Department of Biosciences and Bioinformatics

600 - 646 out of 646 results

Understanding how stress responses and stress-related behaviors have evolved in zebrafish and mammals
Kaluev, A., 29 Sept 2021, In: Neurobiology of Stress.
Research output: Contribution to journal › Review article › peer-review

47 Citations (Scopus)
Understanding neurobehavioral genetics of zebrafish
Kaluev, A., Mar 2020, In: Journal of Neurogenetics.
Research output: Contribution to journal › Review article › peer-review

21 Citations (Scopus)
Understanding sex differences in zebrafish pain- and fear-related behaviors
Kaluev, A., 16 Feb 2022, In: Neuroscience Letters.
Research output: Contribution to journal › Article › peer-review

5 Citations (Scopus)
Understanding zebrafish aggressive behavior
Kaluev, A., Jan 2019, In: Behavioural Processes.
Research output: Contribution to journal › Review article › peer-review

71 Citations (Scopus)
Unveiling the dynamics in RNA epigenetic regulations
Meng, J., Cui, X., Liu, H., Zhang, L., Zhang, S., Rao, M. K., Chen, Y. & Huang, Y., 2013, Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013. p. 139-144 6 p. 6732477. (Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013).
Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review
10 Citations (Scopus)
Citations
Citation Indexes: 10
Captures
Readers: 8
see details
Unveiling the molecular mechanisms of the Type-IX secretion system's response regulator: Structural and functional insights
Saran, A., Kim, H-M., Manning, I., Hancock, M., Schmitz, C., Madej, M., Potempa, J., Sola, M., Trempe, J-F., Zhu, Y., Davey, M. E. & Zeytuni, N., 31 Jul 2024, In: PNAS Nexus. p. 316
Research output: Contribution to journal › Article › peer-review

Open Access
Captures
Readers: 7
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Using zebrafish (Danio rerio) models to understand the critical role of social interactions in mental health and wellbeing
Kaluev, A., Jan 2022, In: Progress in Neurobiology.
Research output: Contribution to journal › Review article › peer-review

31 Citations (Scopus)
Using zebrafish models to study epitranscriptomic regulation of CNS functions
Kaluev, A., 31 Dec 2024, In: Journal of Neurochemistry.
Research output: Contribution to journal › Article › peer-review
Using Zebrafish Models to Study Epitranscriptomic Regulation of CNS Functions
Jiayou, J., Yunqian, Z., Jiyi, W., Yixin, Q., Chonguang, Z., Kai, H., Chaoming, W., Yucheng, L., Haoyu, F., Huiling, C., Shulei, H., Ruiyu, L., Galstyan, D. S., Yang, L., Lim, L. W., S de Abreu, M. & Kaluev, A., Jan 2025, In: Journal of Neurochemistry. 169, 1, e16311.
Research output: Contribution to journal › Article › peer-review
Using Zebrafish Models to Study Epitranscriptomic Regulation of CNS Functions
Jiang, J., Zhang, Y., Wang, J., Qin, Y., Zhao, C., He, K., Wang, C., Liu, Y., Feng, H., Cai, H., He, S., Li, R., Galstyan, D. S., Yang, L., Lim, L. W., de Abreu, M. S. & Kalueff, A. V., Jan 2025, In: Journal of Neurochemistry. 169, 1, e16311.
Research output: Contribution to journal › Review article › peer-review
Captures
Readers: 2
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Validation of crAssphage microbial source tracking markers and comparison with Bacteroidales markers for detection and quantification of faecal contaminations in surface water
Liu, S., Lioe, T. S., Sun, L., Adriaenssens, E. M., McCarthy, A. J. & Sekar, R., 1 Feb 2025, In: Environmental Pollution. 366, 125403.
Research output: Contribution to journal › Article › peer-review
Captures
Readers: 10
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Variability in excess deaths across countries with different vulnerability during 2020-2023
Ioannidis, J. P. A., Zonta, F. & Levitt, M., Oct 2023, In: Proceedings of the National Academy of Sciences of the United States of America. e2309557120.
Research output: Contribution to journal › Article › peer-review

12 Citations (Scopus)
Variability of the Polyphenolic Content and Antioxidant Capacity of Methanolic Extracts of Pomegranate Peel
Kam, A., Li, K. M., Razmovski-Naumovski, V., Name, S., Chan, K. & Li, G. Q., 1 Jun 2013, In: Natural Product Communications.
Research output: Contribution to journal › Article › peer-review

Open Access
12 Citations (Scopus)
Citations
Citation Indexes: 12
Captures
Readers: 7
see details
Viral and cellular N⁶-methyladenosine and N⁶,2′-O-dimethyladenosine epitranscriptomes in the KSHV life cycle
Tan, B., Liu, H., Zhang, S., Da Silva, S. R., Zhang, L., Meng, J., Cui, X., Yuan, H., Sorel, O., Zhang, S. W., Huang, Y. & Gao, S. J., 2017, In: Nature Microbiology. 3, 1, p. 108-120 13 p.
Research output: Contribution to journal › Article › peer-review

Open Access
145 Citations (Scopus)
Citations
Citation Indexes: 145
Captures
Readers: 93
Mentions
News Mentions: 3
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Virtual screening of active ingredients of traditional Chinese medicine in treating COVID-19 based on molecular docking and molecular dynamic simulation
Liu, M., Faez, I. K., Xiao, Y., Wang, X., Hu, Z. & Lai, D., 25 Oct 2022, In: Sheng wu yi xue gong cheng xue za zhi = Journal of biomedical engineering = Shengwu yixue gongchengxue zazhi. 39, 5, p. 1005-1014 10 p.
Research output: Contribution to journal › Article › peer-review

Open Access
Citations
Citation Indexes: 1
Captures
Readers: 3
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Vision transformer promotes cancer diagnosis: A comprehensive review
Jiang, X., Wang, S. & Zhang, Y., 15 Oct 2024, In: Expert Systems with Applications. 252, 124113.
Research output: Contribution to journal › Review article › peer-review
8 Citations (Scopus)
Citations
Citation Indexes: 7
Captures
Readers: 51
Mentions
News Mentions: 1
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Weakly supervised learning of RNA modifications from low-resolution epitranscriptome data
Huang, D., Song, B., Wei, J., Su, J., Coenen, F. & Meng, J., 1 Jul 2021, In: Bioinformatics. 37, Supplement_1, p. I222-I230
Research output: Contribution to journal › Article › peer-review

Open Access
24 Citations (Scopus)
Citations
Citation Indexes: 27
Captures
Readers: 23
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WE-BA: Covid-19 detection by Wavelet Entropy and Bat Algorithm
Yu, W., Pei, Y., Wang, S. & Zhang, Y., 2 Jan 2023, In: EAI Endorsed Transactions on Pervasive Health and Technology. 9, 1
Research output: Contribution to journal › Article › peer-review

Open Access
What is the relevance of FoxP3 in the tumor microenvironment and cancer outcomes?
Meyiah, A. & Elkord, E., 2024, (Accepted/In press) In: Expert Review of Clinical Immunology. 20, 8, p. 803-809 7 p.
Research output: Contribution to journal › Article › peer-review
1 Citation (Scopus)
Citations
Citation Indexes: 1
Captures
Readers: 2
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When fish take a bath: Psychopharmacological characterization of the effects of a synthetic cathinone bath salt 'flakka' on adult zebrafish
Kaluev, A., May 2019, In: Neurotoxicology and Teratology.
Research output: Contribution to journal › Article › peer-review

12 Citations (Scopus)
WHISTLE: A Functionally Annotated High-Accuracy Map of Human m⁶A Epitranscriptome
Xu, Q., Chen, K. & Meng, J., 2021, Methods in Molecular Biology. Humana Press Inc., p. 519-529 11 p. (Methods in Molecular Biology; vol. 2284).
Research output: Chapter in Book or Report/Conference proceeding › Chapter › peer-review
10 Citations (Scopus)
Citations
Citation Indexes: 10
Captures
Readers: 12
see details
WHISTLE: A high-accuracy map of the human N⁶-methyladenosine (m⁶A) epitranscriptome predicted using a machine learning approach
Chen, K., Wei, Z., Zhang, Q., Wu, X., Rong, R., Lu, Z., Su, J., De Magalhães, J. P., Rigden, D. J. & Meng, J., 23 Apr 2019, In: Nucleic Acids Research. 47, 7, e41.
Research output: Contribution to journal › Article › peer-review

Open Access
178 Citations (Scopus)
Citations
Citation Indexes: 177
Captures
Readers: 84
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WHISTLE server: A high-accuracy genomic coordinate-based machine learning platform for RNA modification prediction
Liu, L., Song, B., Chen, K., Zhang, Y., de Magalhães, J. P., Rigden, D. J., Lei, X. & Wei, Z., Jul 2022, In: Methods. 203, p. 378-382 5 p.
Research output: Contribution to journal › Article › peer-review
11 Citations (Scopus)
Citations
Citation Indexes: 11
Captures
Readers: 19
Mentions
News Mentions: 1
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Why South Korea Still Hasn’t Vaccinated Anyone
Fendos, J., 18 Feb 2021
Research output: Other contribution
Why Would the US Have Funded the Controversial Wuhan Lab?
Fendos, J., 13 May 2020
Research output: Other contribution
Wildlife trade is likely the source of SARS-CoV-2
Jiang, X. & Wang, R., 26 Aug 2022, In: Science (New York, N.Y.). 377, 6609, p. 925-926 2 p.
Research output: Contribution to journal › Comment/debate
19 Citations (Scopus)
Citations
Citation Indexes: 19
Captures
Readers: 43
Mentions
News Mentions: 7
References: 7
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Withania somnifera (L.) Dunal (Ashwagandha) for the possible therapeutics and clinical management of SARS-CoV-2 infection: Plant-based drug discovery and targeted therapy
Singh, M., Jayant, K., Singh, D., Bhutani, S., Poddar, N. K., Chaudhary, A. A., Khan, S. U. D., Adnan, M., Siddiqui, A. J., Hassan, M. I., Khan, F. I., Lai, D. & Khan, S., 15 Aug 2022, In: Frontiers in Cellular and Infection Microbiology. 12, 933824.
Research output: Contribution to journal › Review article › peer-review

Open Access
16 Citations (Scopus)
Citations
Citation Indexes: 16
Captures
Readers: 56
Social Media
Shares, Likes & Comments: 7
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WITMSG: Large-scale prediction of human intronic m⁶A RNA methylation sites from sequence and genomic features
Liu, L., Lei, X., Meng, J. & Wei, Z., 2020, In: Current Genomics. 21, 1, p. 67-76 10 p.
Research output: Contribution to journal › Article › peer-review

Open Access
22 Citations (Scopus)
Citations
Citation Indexes: 22
Captures
Readers: 11
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YOLO-MSRF for lung nodule detection
Wu, X., Zhang, H., Sun, J., Wang, S. & Zhang, Y., Aug 2024, In: Biomedical Signal Processing and Control. 94, 106318.
Research output: Contribution to journal › Article › peer-review

Open Access
14 Citations (Scopus)
Citations
Citation Indexes: 13
Captures
Readers: 14
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Zebrafish as a Model of Neurodevelopmental Disorders
Kaluev, A., 1 Oct 2020, In: Neuroscience.
Research output: Contribution to journal › Review article › peer-review

66 Citations (Scopus)
Zebrafish models for attention deficit hyperactivity disorder (ADHD)
Kaluev, A., May 2019, In: Neuroscience & Biobehavioral Reviews.
Research output: Contribution to journal › Review article › peer-review

34 Citations (Scopus)
Zebrafish models for studying cognitive enhancers
Kaluev, A., Kolesnikova, T. O., Demin, K. A., Costa, F. V. & de Abreu, M. S., 16 Sept 2024, In: Neuroscience and Biobehavioral Reviews.
Research output: Contribution to journal › Article › peer-review
Zebrafish models for studying cognitive enhancers
Kolesnikova, T. O., Demin, K. A., Costa, F. V., de Abreu, M. S. & Kalueff, A. V., Aug 2024, In: Neuroscience and Biobehavioral Reviews. 164, 105797.
Research output: Contribution to journal › Review article › peer-review
2 Citations (Scopus)
Citations
Citation Indexes: 2
Captures
Readers: 19
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Zebrafish models of diabetes-related CNS pathogenesis
Kaluev, A., 8 Jun 2019, In: Progress in Neuro-Psychopharmacology and Biological Psychiatry.
Research output: Contribution to journal › Review article › peer-review

24 Citations (Scopus)
Zebrafish models of impulsivity and impulse control disorders
Kaluev, A., Nov 2020, In: European Journal of Neuroscience.
Research output: Contribution to journal › Review article › peer-review

7 Citations (Scopus)
ZIKV viral proteins and their roles in virus-host interactions
Guo, M., Hui, L., Nie, Y., Tefsen, B. & Wu, Y., May 2021, In: Science China Life Sciences. 64, 5, p. 709-719 11 p.
Research output: Contribution to journal › Review article › peer-review

Open Access
14 Citations (Scopus)
Citations
Citation Indexes: 15
Captures
Readers: 52
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一种利用微生物酶系对啤酒酵母细胞进行破壁裂解的方法
Translated title of the contribution: Method for breaking yeast cell walls by utilizing microbial enzyme systemLiu, W., Shi, W., Zhu, Y., Lu, X. & Chen, G., 2009, Patent No. CN101717733 B
Research output: Patent
一种利用酵母制备可溶性β-1,3-葡聚寡糖的方法
Translated title of the contribution: Method for preparing soluble beta-1,3- oligoglucoside by using yeast. Liu, W., Zhu, Y., Lu, X. & Chen, G., 2008, Patent No. CN101434974 B
Research output: Patent
图像分类方法,模型,存储介质及电子设备
Translated title of the contribution: Image classification method and model, storage medium and electronic equipmentWang, C., Ma, F., Su, J., Meng, J., Xiao, C., Yang, C. & Chen, X., 14 Jun 2024, Patent No. CN111582372B, 9 May 2040
Research output: Patent
基于Compact SegUnet自学习模型的双染色体图像切割方法
Translated title of the contribution: A double chromosome image cutting method based on a Compact SegUnet self-learning modelSu, J., Ma, F., Meng, J., Song, S., Huang, D., Shi, C., Xiao, C. & Yang, C., 24 Mar 2023, Patent No. CN109934828B, 28 Feb 2039
Research output: Patent
基于Cy5标记配体的NanoBRET受体结合药物筛选系统
Translated title of the contribution: NanoBRET receptor binding drug screening system based on Cy5 labeled ligandLu, Z., Shen, L., Meng, J. & RONG, RONG., 12 Jul 2024, Patent No. CN112575052B, 15 Dec 2040
Research output: Patent
恒河猴和食蟹猴ABO血型竞争性等位基因PCR（KASP）检测方法的建立
Rong, R., Yang, L. & Wang, L., Aug 2019, In: 中国比较医学杂志. 29, 8, p. 31 36 p., 10.3969/j.issn.
Research output: Contribution to journal › Article › peer-review
拉曼光谱技术在病原微生物检测中的应用
Fengxiang, L., He, S., Huang, X. & Song, Y., Dec 2022, In: Guang Pu Xue Yu Guang Pu Fen Xi/Spectroscopy and Spectral Analysis. 42, 12, p. 3653 3668 p.
Research output: Contribution to journal › Article › peer-review

Open Access
1 Citation (Scopus)
Citations
Citation Indexes: 1
Captures
Readers: 1
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甲状腺激素对心肌 β 肾上腺素受体更新速率的影响
吕志良, 徐建国, 易宁育 & 夏宗勤, 1993, In: 基础医学与临床. 13, 5, p. 53-57
Research output: Contribution to journal › Article › peer-review
肉苁蓉多糖的纯化及其对 T 细胞功能调节的研究
曾群力, 吕志良 & 毛俊浩, 1998, In: 浙江医科大学学报 . 27, 3, p. 108-111
Research output: Contribution to journal › Article › peer-review
表皮生长因子受体(EGFR)配体
Tam, J. P., Loo, S. & Kam, A., 25 Feb 2022
Research output: Other contribution › peer-review

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Department of Biosciences and Bioinformatics

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