Department of Biosciences and Bioinformatics

Research output

Research output per year 1993 2019 2020 2021 2022 2023 2024 2025

• 384 Article
• 72 Review article
• 27 Conference Proceeding
• 15 Other contribution
• 58 More
  • 13 Chapter
  • 12 Meeting Abstract
  • 8 Editorial
  • 8 Patent
  • 7 Letter
  • 6 Comment/debate
  • 1 Anthology
  • 1 Book
  • 1 Paper
  • 1 Conference article

Research output per year

Research output per year

Search results

• 2024

  AlexNet for Image-Based COVID-19 Diagnosis

  Tang, M., Peng, Y., Wang, S., Chen, S. & Zhang, Y., 2024, Proceedings of 2023 International Conference on Medical Imaging and Computer-Aided Diagnosis (MICAD 2023) - Medical Imaging and Computer-Aided Diagnosis. Su, R., Zhang, Y-D. & Frangi, A. F. (eds.). Springer Science and Business Media Deutschland GmbH, p. 166-176 11 p. (Lecture Notes in Electrical Engineering; vol. 1166 LNEE).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

  • Limitations 100%
  • Processing Power 100%
  • Tasks 100%
  • Convolutional Neural Network 100%
  • Adaptability 100%

• Deep Learning for Image Classification: A Review

  Wu, M., Zhou, J., Peng, Y., Wang, S. & Zhang, Y., 2024, Proceedings of 2023 International Conference on Medical Imaging and Computer-Aided Diagnosis (MICAD 2023) - Medical Imaging and Computer-Aided Diagnosis. Su, R., Zhang, Y-D. & Frangi, A. F. (eds.). Springer Science and Business Media Deutschland GmbH, p. 352-362 11 p. (Lecture Notes in Electrical Engineering; vol. 1166 LNEE).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

  • Image Classification 100%
  • Deep Learning 100%
  • Learning Approach 83%
  • Scalability 20%
  • Learning System 20%
  2 Citations (Scopus)

• Machine Learning for Image Denoising: A Review

  Wu, M., Wang, S., Chen, S. & Zhang, Y., 2024, Proceedings of 2023 International Conference on Medical Imaging and Computer-Aided Diagnosis (MICAD 2023) - Medical Imaging and Computer-Aided Diagnosis. Su, R., Zhang, Y-D. & Frangi, A. F. (eds.). Springer Science and Business Media Deutschland GmbH, p. 340-351 12 p. (Lecture Notes in Electrical Engineering; vol. 1166 LNEE).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

  • Machine Learning 100%
  • image denoising 100%
  • Deep Learning 57%
  • Image Quality 42%
  • de-noising 28%

• Stationary Wavelet Entropy and Cat Swarm Optimization to Detect COVID-19

  Wu, M., Chen, S., Wang, J., Wang, S., Gorriz, J. M. & Zhang, Y., 2024, Bioinspired Systems for Translational Applications: From Robotics to Social Engineering - 10th International Work-Conference on the Interplay Between Natural and Artificial Computation, IWINAC 2024, Proceedings. Ferrández Vicente, J. M., Val Calvo, M. & Adeli, H. (eds.). Springer Science and Business Media Deutschland GmbH, p. 150-162 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14675 LNCS).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

  • Cat Swarm Optimization 100%
  • Neural Network 100%
  • Feedforward Neural Network 100%
  • Detection Task 50%
  • Network Performance 25%
• 2023

  A Robust Framework of Chromosome Straightening With Vit-Patch Gan

  Song, S., Wang, J., Cheng, F., Cao, Q., Zuo, Y., Lei, Y., Yang, R., Yang, C., Coenen, F., Meng, J., Dang, K. & Su, J., 18 Apr 2023, 2023 IEEE International Symposium on Biomedical Imaging, ISBI 2023. IEEE Computer Society, (Proceedings - International Symposium on Biomedical Imaging; vol. 2023-April).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

  Open Access

  • Motion 100%
  • Cytogenetics 100%
  • Genetics 50%
  • Karyotype 50%
  • Perceptual Image 33%
  1 Citation (Scopus)
• 2022

  Decoding the stochastic profile of m6A over the entire transcriptome

  Wang, J., Wei, Z. & Zhang, Y., 2022, BIBE 2022 - 6th International Conference on Biological Information and Biomedical Engineering. Chen, B. (ed.). VDE Verlag GmbH, p. 79-82 4 p. (BIBE 2022 - 6th International Conference on Biological Information and Biomedical Engineering).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

  • Experiment 100%
  • Transcriptome 100%
  • Binding Protein 100%
  • RNA 50%
  • Biological Functions 50%

• Stepwise Feature Fusion: Local Guides Global

  Wang, J., Huang, Q., Tang, F., Meng, J., Su, J. & Song, S., 2022, Medical Image Computing and Computer Assisted Intervention – MICCAI 2022 - 25th International Conference, Proceedings. Wang, L., Dou, Q., Fletcher, P. T., Speidel, S. & Li, S. (eds.). Springer Science and Business Media Deutschland GmbH, p. 110-120 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13433 LNCS).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

  • Polyp 100%
  • Learning 60%
  • Colonoscopy 40%
  • Restrict Attention 33%
  • Polyp Segmentation 33%
  123 Citations (Scopus)
• 2021

  A Meta-analysis: Evaluating the Effect of METTL3/METTL14 on m6A Level Based on Knockdown Samples

  Zhang, Y., Wu, Y., Zhen, D., Chen, K. & Meng, J., 20 Jul 2021, Proceedings of the 5th International Conference on Biological Information and Biomedical Engineering, BIBE 2021. Chen, B. (ed.). Association for Computing Machinery, 3469715. (ACM International Conference Proceeding Series).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

  • Methylation 100%
  • Sample 100%
  • Meta-Analysis 100%
  • Messenger RNA 66%
  • Methyltransferase 33%

• A Novel Application of Image-to-Image Translation: Chromosome Straightening Framework by Learning from a Single Image

  Song, S., Huang, D., Hu, Y., Yang, C., Meng, J., Ma, F., Coenen, F., Zhang, J. & Su, J., 2021, Proceedings - 2021 14th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics, CISP-BMEI 2021. Li, Q., Wang, L., Wang, Y. & Li, W. (eds.). Institute of Electrical and Electronics Engineers Inc., (Proceedings - 2021 14th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics, CISP-BMEI 2021).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

  Open Access
  7 Citations (Scopus)

• Computational Prediction of N⁶-methyladenosine (m⁶A) RNA Methylation in SARS-CoV-2 Viral Transcripts

  Xu, Q., Wu, X. & Meng, J., 20 Jul 2021, Proceedings of the 5th International Conference on Biological Information and Biomedical Engineering, BIBE 2021. Chen, B. (ed.). Association for Computing Machinery, 3469689. (ACM International Conference Proceeding Series).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

  • N6-Methyladenosine 100%
  • RNA Methylation 100%
  • SARS Coronavirus 100%
  • RNA 100%
  • 6 N Methyladenosine 100%
• 2020

  An Improved Algorithm for Estimating the Distribution of RNA-related Genomic Features

  Wu, J., Zhang, L., Weng, Y., Meng, J., Su, J. & Wang, Y., 21 Jul 2020, Proceedings of the 4th International Conference on Biological Information and Biomedical Engineering, BIBE 2020. Yu, W. & Liu, C. (eds.). Association for Computing Machinery, (ACM International Conference Proceeding Series).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

• Gibbs Sampling Based Banoian Biclustering of Gene Expression Data

  Chen, D., Liu, Q., Meng, J. & Su, J., 17 Oct 2020, Proceedings - 2020 13th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics, CISP-BMEI 2020. Zheng, Q., Zheng, X., Zhao, X., Yan, W., Zhang, N. & Wang, L. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 790-795 6 p. 9263631. (Proceedings - 2020 13th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics, CISP-BMEI 2020).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

  • Models 100%
  • Simulated Data 33%
  • Microarray Data 33%
• 2019

  AMPrimer: An R package for anchored multiplex PCR primer design

  Wang, Y., Liu, X., Wu, X., Yuan, X., Meng, J. & Tang, Y., 2019, 3rd International Conference on Biological Information and Biomedical Engineering, BIBE 2019. VDE Verlag GmbH, p. 293-296 4 p. (3rd International Conference on Biological Information and Biomedical Engineering, BIBE 2019).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

• Estimate the proportion of non-specific binding in MeRIP-Seq data

  Bao, J., Wei, Z., Meng, J. & Su, J., 2019, 3rd International Conference on Biological Information and Biomedical Engineering, BIBE 2019. VDE Verlag GmbH, p. 392-396 5 p. (3rd International Conference on Biological Information and Biomedical Engineering, BIBE 2019).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

• Predict disease-related RNA methylation sites from the methylationexpression association by using hypergeometric test

  Tang, Y., Chen, K., Wei, Z., Wu, X. & Meng, J., 2019, 3rd International Conference on Biological Information and Biomedical Engineering, BIBE 2019. VDE Verlag GmbH, p. 418-424 7 p. (3rd International Conference on Biological Information and Biomedical Engineering, BIBE 2019).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

  • Association 100%
  • RNA Methylation 100%
  • Methylation 100%
  • RNA 100%
  • Nested Gene 25%
• 2018

  Differential analysis of RNA methylation with a novel statistical test

  Tang, Y., Wei, Z. & Meng, J., 2018, International Conference on Biological Information and Biomedical Engineering, BIBE 2018. Liu, C. (ed.). VDE Verlag GmbH, p. 366-373 8 p. (International Conference on Biological Information and Biomedical Engineering, BIBE 2018).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

• Interactive genomic visualization for R/bioconductor

  Ma, J. & Meng, J., 2018, International Conference on Biological Information and Biomedical Engineering, BIBE 2018. Liu, C. (ed.). VDE Verlag GmbH, p. 380-383 4 p. (International Conference on Biological Information and Biomedical Engineering, BIBE 2018).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

  2 Citations (Scopus)
• 2016

  Novel numerical and computational techniques for remote sensor based monitoring of freshwater quality

  Zhu, X., Yue, Y., Wong, P., Zhang, Y. & Meng, J., 17 Sept 2016, Proceedings of 2016 IEEE International Conference of Online Analysis and Computing Science, ICOACS 2016. Chen, G. & Peng, J. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 91-95 5 p. 7563055. (Proceedings of 2016 IEEE International Conference of Online Analysis and Computing Science, ICOACS 2016).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review
• 2015

  Modeling of replicates variances for detecting RNA methylation site in MERIP-SEQ data

  Cui, X., Meng, J., Zhang, S. & Huang, Y., 31 Aug 2015, 2015 IEEE China Summit and International Conference on Signal and Information Processing, ChinaSIP 2015 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 802-806 5 p. 7230515. (2015 IEEE China Summit and International Conference on Signal and Information Processing, ChinaSIP 2015 - Proceedings).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

• Sketching the distribution of transcriptomic features on RNA transcripts with Travis coordinates

  Cui, X., Wei, Z., Zhang, L., Liu, H., Sun, L., Zhang, S. W., Huang, Y. & Meng, J., 16 Dec 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Schapranow, L. M., Zhou, J., Hu, X. T., Ma, B., Rajasekaran, S., Miyano, S., Yoo, I., Pierce, B., Shehu, A., Gombar, V. K., Chen, B., Pai, V. & Huan, J. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1536-1542 7 p. 7359904. (Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review
• 2014

  Detecting differentially methylated mRNA from MeRIP-Seq with likelihood ratio test

  Zhang, L., Meng, J., Liu, H., Cui, X., Zhang, S. W., Chen, Y. & Huang, Y., 5 Feb 2014, 2014 IEEE Global Conference on Signal and Information Processing, GlobalSIP 2014. Institute of Electrical and Electronics Engineers Inc., p. 1368-1371 4 p. 7032349. (2014 IEEE Global Conference on Signal and Information Processing, GlobalSIP 2014).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review
  2 Citations (Scopus)

• Differential analysis of RNA methylome with improved spatial resolution

  Zhang, Y. C., Zhang, S. W., Liu, L., Zhang, L., Liu, H., Cui, X., Huang, Y. & Meng, J., 5 Feb 2014, 2014 IEEE Global Conference on Signal and Information Processing, GlobalSIP 2014. Institute of Electrical and Electronics Engineers Inc., p. 1372-1375 4 p. 7032350. (2014 IEEE Global Conference on Signal and Information Processing, GlobalSIP 2014).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review
• 2013

  Differential analysis of rna methylation sequencing data

  Cui, X., Meng, J., Rao, M. K., Chen, Y. & Huang, Y., 2013, 2013 IEEE Global Conference on Signal and Information Processing, GlobalSIP 2013 - Proceedings. p. 41-42 2 p. 6736806. (2013 IEEE Global Conference on Signal and Information Processing, GlobalSIP 2013 - Proceedings).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review
  1 Citation (Scopus)

• Integration of gene expression, genome wide DNA methylation, and gene networks for clinical outcome prediction in ovarian cancer

  Zhang, L., Liu, H., Meng, J., Wang, X., Chen, Y. & Huangi, Y., 2013, Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013. p. 535-538 4 p. 6732553. (Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

  • Gene 100%
  • Prognosis 100%
  • Gene Expression 100%
  • Ovarian Cancer 100%
  • DNA Methylation 100%

• PEG-PLGA nanoparticle modified by transferrin loading doxorubicin: In vitro and in vivo studies for glioma

  Liu, G. D., Mao, J. N., Sun, T., Jiang, Z., Dong, J., Huang, Q. & Lan, Q., 2013, Advanced Engineering Materials III. p. 1643-1650 8 p. (Advanced Materials Research; vol. 750-752).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

  • Doxorubicin 100%
  • Glioma 100%
  • Transferrin 100%
  • Ganglioglioma 100%
  • Polyethylene Glycol 100%
  1 Citation (Scopus)

• Unveiling the dynamics in RNA epigenetic regulations

  Meng, J., Cui, X., Liu, H., Zhang, L., Zhang, S., Rao, M. K., Chen, Y. & Huang, Y., 2013, Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013. p. 139-144 6 p. 6732477. (Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review
  10 Citations (Scopus)
• 2009

  LIGAND-INDUCED-SELECTIVE-SIGNALLING (LISS) AT THE GONADOTROPIN-RELEASING-HORMONE (GnRH) RECEPTOR

  Millar, R. P., Lu, Z., Morgan, K. & Pawson, A., 2009, JOURNAL OF PHYSIOLOGICAL SCIENCES. Japan: Springrt Tokyo: Springer Tokyo, Vol. 59. p. 30

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review