Department of Biosciences and Bioinformatics

Research output

Research output per year 1993 2019 2020 2021 2022 2023 2024 2025

• 385 Article
• 72 Review article
• 27 Conference Proceeding
• 14 Other contribution
• 60 More
  • 13 Chapter
  • 12 Meeting Abstract
  • 9 Patent
  • 8 Editorial
  • 7 Letter
  • 6 Comment/debate
  • 2 Book
  • 1 Anthology
  • 1 Paper
  • 1 Conference article

Research output per year

Research output per year

Search results

• 2024

  Breast cancer diagnosis: A systematic review

  Wen, X., Guo, X., Wang, S., Lu, Z. & Zhang, Y., 1 Jan 2024, In: Biocybernetics and Biomedical Engineering. 44, 1, p. 119-148 30 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Breast Cancer 100%
  • Cancer Diagnosis 100%
  • Systematic Review 100%
  • Learning 80%
  • Development 40%
  7 Citations (Scopus)

• Comparing Business, Innovation, and Platform Ecosystems: A Systematic Review of the Literature

  Liu, Z., Li, Z., Zhang, Y., Mutukumira, A. N., Feng, Y., Cui, Y., Wang, S., Wang, J. & Wang, S., Apr 2024, In: Biomimetics. 9, 4, 216.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Content Analysis 100%
  • Bibliology 100%
  • Systematic Review 100%
  • Business Innovation 100%
  • Business Ecosystem 100%
  1 Citation (Scopus)

• Deep learning on medical image analysis

  Wang, J., Wang, S. & Zhang, Y., 2024, (Accepted/In press) In: CAAI Transactions on Intelligence Technology.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Image Analysis 100%
  • Deep Learning 100%
  • Neural Network 100%
  • Learning Strategy 100%
  • Convolutional Neural Network 50%

• From sequence to mechanobiology? Promises and challenges for AlphaFold 3

  Zonta, F. & Pantano, S., 1 Sept 2024, In: Mechanobiology in Medicine. 2, 3

  Research output: Contribution to journal › Review article › peer-review

• Glymphotherapeutics for Alzheimer's disease: Time to move the needle

  MohanaSundaram, A. S., Mofatteh, M., Ashraf, G. M. & Praticò, D., Nov 2024, In: Ageing Research Reviews. 101, 102478.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Aquaporin 4 100%
  • Encephalitis 100%
  • Meningitis 100%
  • Disease Modifying Therapy 100%
  • Aducanumab 100%

• Novel roles of ammonia in physiology and cancer: Novel roles of ammonia in physiology and cancer

  Chen, G., Wang, C. & Dai, W., 14 Jul 2024, (Submitted) In: Journal of Molecular Cell Biology. JMCB-2024-0254.

  Research output: Contribution to journal › Review article › peer-review

  • Ammonium 100%
  • Energy Metabolism 50%
  • Physiological Process 50%
  • Neurotransmission 50%
  • Amino Acid Synthesis 50%

• Vision transformer promotes cancer diagnosis: A comprehensive review

  Jiang, X., Wang, S. & Zhang, Y., 15 Oct 2024, In: Expert Systems with Applications. 252, 124113.

  Research output: Contribution to journal › Review article › peer-review

  • Artificial Intelligence 100%
  • Cancer Diagnosis 100%
  • Supervised Learning 66%
  • Malignant Neoplasm 50%
  • Multilayer Neural Networks 33%
  2 Citations (Scopus)

• Zebrafish models for studying cognitive enhancers

  Kolesnikova, T. O., Demin, K. A., Costa, F. V., de Abreu, M. S. & Kalueff, A. V., Aug 2024, In: Neuroscience and Biobehavioral Reviews. 164, 105797.

  Research output: Contribution to journal › Review article › peer-review

  • Enhancer Region 100%
  • Nootropic 100%
  • Cognitive Disorders 50%
  • Cognitive Process 50%
• 2023

  Current State of Modeling Human Psychiatric Disorders Using Zebrafish

  Kaluev, A., 6 Feb 2023, In: International Journal of Molecular Sciences.

  Research output: Contribution to journal › Review article › peer-review

  9 Citations (Scopus)

• Developing Novel Experimental Models of m-TORopathic Epilepsy and Related Neuropathologies: Translational Insights from Zebrafish

  Kaluev, A., 12 Jan 2023, In: International Journal of Molecular Sciences.

  Research output: Contribution to journal › Review article › peer-review

  5 Citations (Scopus)

• Experimental models of human cortical malformations: from mammals to 'acortical' zebrafish

  Kaluev, A., 18 Oct 2023, In: Neuroscience & Biobehavioral Reviews.

  Research output: Contribution to journal › Review article › peer-review

  5 Citations (Scopus)

• Forward Genetics-Based Approaches to Understanding the Systems Biology and Molecular Mechanisms of Epilepsy

  Kaluev, A., Mar 2023, In: International Journal of Molecular Sciences.

  Research output: Contribution to journal › Review article › peer-review

  4 Citations (Scopus)

• Towards experimental models of delirium utilizing zebrafish

  Kaluev, A., 13 Sept 2023, In: Behavioural Brain Research.

  Research output: Contribution to journal › Review article › peer-review

  1 Citation (Scopus)

• Towards Novel Potential Molecular Targets for Antidepressant and Antipsychotic Pharmacotherapies

  Kaluev, A., 30 May 2023, In: International Journal of Molecular Sciences.

  Research output: Contribution to journal › Review article › peer-review

  7 Citations (Scopus)

• Understanding CNS Effects of Antimicrobial Drugs Using Zebrafish Models

  Kaluev, A., 29 Jan 2023, In: Veterinary Sciences .

  Research output: Contribution to journal › Review article › peer-review

  2 Citations (Scopus)
• 2022

  Aberrant Ganglioside Functions to Underpin Dysregulated Myelination, Insulin Signalling, and Cytokine Expression: Is There a Link and a Room for Therapy?

  Kaluev, A., 7 Oct 2022, In: Biomolecules .

  Research output: Contribution to journal › Review article › peer-review

  5 Citations (Scopus)

• Detecting RNA modification using direct RNA sequencing: A systematic review

  Zhao, X., Zhang, Y., Hang, D., Meng, J. & Wei, Z., Jan 2022, In: Computational and Structural Biotechnology Journal. 20, p. 5740-5749 10 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Taxonomy 100%
  • RNA Sequence 100%
  • RNA 100%
  • RNA Sequencing 100%
  • Sequencing 33%
  10 Citations (Scopus)

• Exploring CNS Effects of American Traditional Medicines using Zebrafish Models

  Kaluev, A., 4 Mar 2022, In: Current Neuropharmacology.

  Research output: Contribution to journal › Review article › peer-review

  3 Citations (Scopus)

• Hepatitis B Viral Protein HBx and the Molecular Mechanisms Modulating the Hallmarks of Hepatocellular Carcinoma: A Comprehensive Review

  Sivasudhan, E., Blake, N., Lu, Z., Meng, J. & Rong, R., 21 Feb 2022, In: Cells. 11, 4, 741.

  Research output: Contribution to journal › Review article › peer-review

  Open Access
  44 Citations (Scopus)

• Modeling neurodegenerative disorders in zebrafish

  Kaluev, A., Jun 2022, In: Neuroscience & Biobehavioral Reviews.

  Research output: Contribution to journal › Review article › peer-review

  35 Citations (Scopus)

• The critical impact of sex on preclinical alcohol research - Insights from zebrafish

  Kaluev, A., Oct 2022, In: Frontiers in Neuroendocrinology.

  Research output: Contribution to journal › Review article › peer-review

• The therapeutic prospects and challenges of human neural stem cells for the treatment of Alzheimer's Disease

  Yue, C., Feng, S., Chen, Y. & Jing, N., Dec 2022, In: Cell Regeneration. 11, 1, 28.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Combination Therapy 100%
  • Alzheimer's Disease 100%
  • Neural Stem Cell 100%
  • Treatment of Alzheimer's Disease 100%
  • Therapeutic Procedure 28%
  8 Citations (Scopus)

• Towards Modeling Anhedonia and Its Treatment in Zebrafish

  Kaluev, A., 19 Apr 2022, In: International Journal of Neuropsychopharmacology.

  Research output: Contribution to journal › Review article › peer-review

  6 Citations (Scopus)

• Towards translational modeling of behavioral despair and its treatment in zebrafish

  Kaluev, A., 26 Jun 2022, In: Behavioural Brain Research.

  Research output: Contribution to journal › Review article › peer-review

  3 Citations (Scopus)

• Towards Zebrafish Models of CNS Channelopathies

  Kaluev, A., 12 Nov 2022, In: International Journal of Molecular Sciences.

  Research output: Contribution to journal › Review article › peer-review

  7 Citations (Scopus)

• Understanding early-life pain and its effects on adult human and animal emotionality: Translational lessons from rodent and zebrafish models

  Kaluev, A., 18 Jan 2022, In: Neuroscience Letters.

  Research output: Contribution to journal › Review article › peer-review

  2 Citations (Scopus)

• Using zebrafish (Danio rerio) models to understand the critical role of social interactions in mental health and wellbeing

  Kaluev, A., Jan 2022, In: Progress in Neurobiology.

  Research output: Contribution to journal › Review article › peer-review

  27 Citations (Scopus)

• Withania somnifera (L.) Dunal (Ashwagandha) for the possible therapeutics and clinical management of SARS-CoV-2 infection: Plant-based drug discovery and targeted therapy

  Singh, M., Jayant, K., Singh, D., Bhutani, S., Poddar, N. K., Chaudhary, A. A., Khan, S. U. D., Adnan, M., Siddiqui, A. J., Hassan, M. I., Khan, F. I., Lai, D. & Khan, S., 15 Aug 2022, In: Frontiers in Cellular and Infection Microbiology. 12, 933824.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Medicinal Plant 100%
  14 Citations (Scopus)
• 2021

  CNS genomic profiling in the mouse chronic social stress model implicates a novel category of candidate genes integrating affective pathogenesis

  Kaluev, A., 8 Mar 2021, In: Progress in Neuro-Psychopharmacology and Biological Psychiatry.

  Research output: Contribution to journal › Review article › peer-review

  6 Citations (Scopus)

• Color as an important biological variable in zebrafish models: Implications for translational neurobehavioral research

  Kaluev, A., May 2021, In: Neuroscience & Biobehavioral Reviews.

  Research output: Contribution to journal › Review article › peer-review

  12 Citations (Scopus)

• Dynamics of m6A RNA Methylome on the Hallmarks of Hepatocellular Carcinoma

  Sivasudhan, E., Blake, N., Lu, Z. L., Meng, J. & Rong, R., 1 Apr 2021, In: Frontiers in Cell and Developmental Biology. 9, 642443.

  Research output: Contribution to journal › Review article › peer-review

  Open Access
  14 Citations (Scopus)

• Extracellular heat shock proteins and cancer: New perspectives

  Albakova, Z., Siam, M. K. S., Sacitharan, P. K., Ziganshin, R. H., Ryazantsev, D. Y. & Sapozhnikov, A. M., Feb 2021, In: Translational Oncology. 14, 2, 100995.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Heat Shock Protein 100%
  • MicroRNA 40%
  • Regulatory Mechanism 20%
  • Liquid 20%
  • Proteomics 20%
  64 Citations (Scopus)

• Of mice and zebrafish: the impact of the experimenter identity on animal behavior

  Kaluev, A., Jan 2021, In: Lab Animal.

  Research output: Contribution to journal › Review article › peer-review

  11 Citations (Scopus)

• Recent advances in functional annotation and prediction of the epitranscriptome

  Zhang, S. Y., Zhang, S. W., Zhang, T., Fan, X. N. & Meng, J., Jan 2021, In: Computational and Structural Biotechnology Journal. 19, p. 3015-3026 12 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access
  15 Citations (Scopus)

• Src family kinases in the central nervous system: Their emerging role in pathophysiology of migraine and neuropathic pain

  Nie, L., Ye, W. R., Chen, S., Chirchiglia, D. & Wang, M., 2021, In: Current Neuropharmacology. 19, 5, p. 665-678 14 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access
  14 Citations (Scopus)

• The animal origin of SARS-CoV-2

  Lytras, S., Xia, W., Hughes, J., Jiang, X. & Robertson, D. L., 27 Aug 2021, In: Science. 373, 6558, p. 968-970 3 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access
  81 Citations (Scopus)

• The origins of SARS-CoV-2: A critical review

  Holmes, E. C., Goldstein, S. A., Rasmussen, A. L., Robertson, D. L., Crits-Christoph, A., Wertheim, J. O., Anthony, S. J., Barclay, W. S., Boni, M. F., Doherty, P. C., Farrar, J., Geoghegan, J. L., Jiang, X., Leibowitz, J. L., Neil, S. J. D., Skern, T., Weiss, S. R., Worobey, M., Andersen, K. G., Garry, R. F., & 1 othersRambaut, A., 16 Sept 2021, In: Cell. 184, 19, p. 4848-4856 9 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Severe Acute Respiratory Syndrome 100%
  • Comprehension 50%
  • Severe Acute Respiratory Syndrome Coronavirus 2 50%
  • SARS-related Coronavirus 50%
  • Zoonotic 50%
  326 Citations (Scopus)

• Transcription factor AP4 mediates cell fate decisions: To divide, age, or die

  Wong, M. M. K., Joyson, S. M., Hermeking, H. & Chiu, S. K., 2 Feb 2021, In: Cancers. 13, 4, p. 1-15 15 p., 676.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Gene 100%
  • Signal Transduction 100%
  • Transcription Factor 100%
  • Oncogene C Myc 100%
  • Age 100%
  15 Citations (Scopus)

• Unconventional anxiety pharmacology in zebrafish: Drugs beyond traditional anxiogenic and anxiolytic spectra

  Kaluev, A., Aug 2021, In: Pharmacology Biochemistry and Behavior.

  Research output: Contribution to journal › Review article › peer-review

  11 Citations (Scopus)

• Understanding how stress responses and stress-related behaviors have evolved in zebrafish and mammals

  Kaluev, A., 29 Sept 2021, In: Neurobiology of Stress.

  Research output: Contribution to journal › Review article › peer-review

  33 Citations (Scopus)

• ZIKV viral proteins and their roles in virus-host interactions

  Guo, M., Hui, L., Nie, Y., Tefsen, B. & Wu, Y., May 2021, In: Science China Life Sciences. 64, 5, p. 709-719 11 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Zika Virus 100%
  • Virus Cell Interaction 100%
  • Zika Fever 50%
  • Microcephaly 25%
  • Host Factor 25%
  12 Citations (Scopus)
• 2020

  Bioinformatics approaches for deciphering the epitranscriptome: Recent progress and emerging topics

  Liu, L., Song, B., Ma, J., Song, Y., Zhang, S. Y., Tang, Y., Wu, X., Wei, Z., Chen, K., Su, J., Rong, R., Lu, Z., de Magalhães, J. P., Rigden, D. J., Zhang, L., Zhang, S. W., Huang, Y., Lei, X., Liu, H. & Meng, J., 2020, In: Computational and Structural Biotechnology Journal. 18, p. 1587-1604 18 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • RNA 100%
  • Bioinformatics 100%
  • Epitranscriptome 100%
  • Association 16%
  • Development 16%
  41 Citations (Scopus)

• Effectiveness and Safety of High Dose Tigecycline for the Treatment of Severe Infections: A Systematic Review and Meta-Analysis

  Zha, L., Pan, L., Guo, J., French, N., Villanueva, E. V. & Tefsen, B., 1 Mar 2020, In: Advances in Therapy. 37, 3, p. 1049-1064 16 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access
  72 Citations (Scopus)

• Emotional behavior in aquatic organisms? Lessons from crayfish and zebrafish

  Kaluev, A., May 2020, In: Journal of Neuroscience Research.

  Research output: Contribution to journal › Review article › peer-review

  24 Citations (Scopus)

• Non-pharmacological and pharmacological approaches for psychiatric disorders: Re-appraisal and insights from zebrafish models

  Kaluev, A., Jul 2020, In: Pharmacology Biochemistry and Behavior.

  Research output: Contribution to journal › Review article › peer-review

  15 Citations (Scopus)

• Sex differences in adult zebrafish anxiolytic-like responses to diazepam and melatonin

  Kaluev, A., 1 Jan 2020, In: Neuroscience Letters.

  Research output: Contribution to journal › Review article › peer-review

  49 Citations (Scopus)

• Sex differences in behavior and neuropharmacology of zebrafish

  Kaluev, A., Jul 2020, In: European Journal of Neuroscience.

  Research output: Contribution to journal › Review article › peer-review

  46 Citations (Scopus)

• The Influence of Behavioral, Social, and Environmental Factors on Reproducibility and Replicability in Aquatic Animal Models

  Kaluev, A., 19 Oct 2020, In: ILAR Journal.

  Research output: Contribution to journal › Review article › peer-review

  19 Citations (Scopus)

• Ultrasound stress compromises the correlates of emotional-like states and brain AMPAR expression in mice: effects of antioxidant and anti-inflammatory herbal treatment

  Kaluev, A., Jan 2020, In: Stress and Health.

  Research output: Contribution to journal › Review article › peer-review

• Understanding neurobehavioral genetics of zebrafish

  Kaluev, A., Mar 2020, In: Journal of Neurogenetics.

  Research output: Contribution to journal › Review article › peer-review

  19 Citations (Scopus)