TY - GEN
T1 - Interactive genomic visualization for R/bioconductor
AU - Ma, Jialin
AU - Meng, Jia
N1 - Publisher Copyright:
© VDE VERLAG GMBH - Berlin - Offenbach.
PY - 2018
Y1 - 2018
N2 - Bioconductor is software repository of R packages which collectively provide a computational environment for analysis and comprehension of high-throughput genomic data. To support convenient visualization of Bioconductor data classes, an R/Bioconductor package TnT is developed by wrapping the TnT JavaScript libraries into R. The package provides a way to view track-based annotation data in an interactive genome browser which allows panning, zooming and showing external information with tooltip. Different types of tracks are available, including the ones for showing genes and tran-scripts. Both convenience and flexibility are taken into consideration during the design of the package. The package is freely available from Bioconductor at: https://bioconductor.org/packages/TnT.
AB - Bioconductor is software repository of R packages which collectively provide a computational environment for analysis and comprehension of high-throughput genomic data. To support convenient visualization of Bioconductor data classes, an R/Bioconductor package TnT is developed by wrapping the TnT JavaScript libraries into R. The package provides a way to view track-based annotation data in an interactive genome browser which allows panning, zooming and showing external information with tooltip. Different types of tracks are available, including the ones for showing genes and tran-scripts. Both convenience and flexibility are taken into consideration during the design of the package. The package is freely available from Bioconductor at: https://bioconductor.org/packages/TnT.
UR - http://www.scopus.com/inward/record.url?scp=85087783954&partnerID=8YFLogxK
M3 - Conference Proceeding
AN - SCOPUS:85087783954
T3 - International Conference on Biological Information and Biomedical Engineering, BIBE 2018
SP - 380
EP - 383
BT - International Conference on Biological Information and Biomedical Engineering, BIBE 2018
A2 - Liu, Chengyu
PB - VDE Verlag GmbH
T2 - 2nd International Conference on Biological Information and Biomedical Engineering, BIBE 2018
Y2 - 6 July 2018 through 8 July 2018
ER -