Projects per year
Personal profile
Personal profile
My scientific background is Theoretical and Mathematical Physics and in particular Statistical Mechanics and Thermodynamics.In 2004, I was admitted to the Ph.D. school in Physics at Padua University under the supervision of Prof. Attilio L. Stella and Prof. Enzo Orlandini. I focused on the connection between statistical and topological properties of polymers. During the Ph.D. my research interests gradually shifted towards the simulation of biological macromolecules, DNA and proteins.As a post-doctoral fellow and young researcher (2007-2015), I joined the laboratory of Prof. Fabio Mammano at the Venetian Institute of Molecular Medicine (VIMM, Padua), where I started to work on a computational model, based on Quantum Mechanics and Molecular Dynamics simulations, of a gap-junction hemichannel.In 2015 I moved to the Shanghai Institute for Advanced Immunochemical Studies (SIAIS) of Shanghaitech University as Research Associate Professor. From 2015 to 2018 I have been a Research Associate Professor in the Phenotypic Screening lab of Prof. Guang Yang and the director of the Informatics and Computation Platform.In 2018 I joined as Co-PI the newly established Laboratory of Computational Biology in SIAIS, and initiated my collaboration with Prof.Michael Levitt. In 2023 I moved to XJTLU as Associate Professor in the Department of Biological Sciences. Here my research is focused on the development computer-aided methods for drug design (in particular antibodies), multiscale simulations of biological systems, and of machine learning force fields.
Research interests
My research focus on modeling of biological systems using Molecular Dynamics simulations with focus on important drug targets. Since 2007 I have been working on Connexin hemichannels, to understand how mutations change their permeation properties causing major diseases. From 2015 I have been working on modeling and designing antibodies that can interact with the connexin hemichannels (and other targets) aiming at the treatment of some incurable genetic diseases. I have been also working on the development of new force fields using Machine Learning. Finally, since 2019 I am working on modeling COVID-19 spread in the population, to understand how intervention can be used to mitigate the infections.
Experience
2023 - Associate Professor, XJTLU, Department of Biological Sciences
2015-2023 - Research Associate Professor, ShanghaiTech University, SIAIS
2011-2015 - Young Researcher, Padova University, Department of Physics and Astronomy
2007 - 2011 - Post Doc, Venetian Institute for Molecular Medicine
Teaching
2023/24 BIO311 Modeling for Computational Biology
2023/24 SCI002 Scientific Principles and Methods
2022/23 APH408 Computer-assisted Drug Development
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
Education/Academic qualification
Ph.D. in Physics, Padova University, 2007
MSc in Physics, Padova University, 2003
External positions
Adjunct Lecturer, Taylor's University Malaysia
1 Jan 2024 → 31 Dec 2025
Person Types
- Staff
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Collaborations and top research areas from the last five years
Projects
- 1 Active
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Development of computational methods for the design of novel therapeutic antibodies
1/01/24 → 31/12/26
Project: Internal Research Project
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Molecular Dynamics Simulation of Permeation Through Connexin Channels
Zonta, F., Mammano, F. & Pantano, S., 8 Apr 2024, Methods in Molecular Biology: Connexin Hemichannels. Vol. 2801. p. 45-56Research output: Chapter in Book or Report/Conference proceeding › Chapter › peer-review
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Antibody gene transfer treatment drastically improves epidermal pathology in a keratitis ichthyosis deafness syndrome model using male mice
Peres, C., Sellitto, C., Nardin, C., Putti, S., Orsini, T., Di Pietro, C., Marazziti, D., Vitiello, A., Calistri, A., Rigamonti, M., Scavizzi, F., Raspa, M., Zonta, F., Yang, G., White, T. W. & Mammano, F., Mar 2023, In: EBioMedicine. 89, 104453.Research output: Contribution to journal › Article › peer-review
Open Access3 Citations (Scopus) -
Development of a machine learning multiclass screening tool for periodontal health status based on non-clinical parameters and salivary biomarkers.
Deng, K., Zonta, F., Yang, H., Pelekos, G. & Tonetti, M., 2023, In: Journal of Clinical Periodontology.Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus) -
Estimates of COVID-19 deaths in Mainland China after abandoning zero COVID policy
Ioannidis, J. P. A., Zonta, F. & Levitt, M., Apr 2023, In: European Journal of Clinical Investigation. 53, 4, e13956.Research output: Contribution to journal › Article › peer-review
Open Access19 Citations (Scopus) -
Excess death estimates from multiverse analysis in 2009–2021
Levitt, M., Zonta, F. & Ioannidis, J. P. A., Nov 2023, In: European Journal of Epidemiology. 38, 11, p. 1129-1139 11 p.Research output: Contribution to journal › Article › peer-review
Open Access6 Citations (Scopus)
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Scientific Reports (Journal)
Francesco Zonta (Member of editorial board)
17 Apr 2024 → …Activity: Peer-review and editorial work of publications › Editorial work
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Discussion about future career paths
Francesco Zonta (Speaker)
19 Dec 2023Activity: Talk or presentation › Invited talk
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Free energy landscapes in protein dynamics and design
Francesco Zonta (Speaker)
19 Jul 2023Activity: Talk or presentation › Invited talk
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Molecular dynamics in antibody engineering
Francesco Zonta (Speaker)
17 Jul 2023Activity: Talk or presentation › Invited talk
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