TY - GEN
T1 - Pseudo Training Data Generation for Unsupervised Cell Membrane Segmentation in Immunohistochemistry Images
AU - Long, Xi
AU - Wang, Tianyang
AU - Kan, Yanjia
AU - Wang, Yunze
AU - Chen, Silin
AU - Zhou, Albert
AU - Hou, Xianxu
AU - Liu, Jingxin
N1 - Publisher Copyright:
© 2024 IEEE.
PY - 2024
Y1 - 2024
N2 - In the realm of clinical diagnostics and medical research, quantitative assessment of membrane activity in immunohistochemistry (IHC) images is standard practice. Despite a high demand for cell membrane segmentation, only a few algorithms have been developed, and there is a lack of open datasets in this field. In this paper, we propose a three-stage unsupervised framework to accurately segment positive cell membranes in IHC images. Our approach transforms the unsupervised segmentation task into a supervised one by generating pseudo-paired training data using Voronoi diagrams and CycleGAN. Additionally, we introduce a dual encoder segmentation model with domain adaptation modules to mitigate the domain shift between generated images and real images. To our best knowledge, this is the first work focusing on unsupervised learning for IHC cell membrane segmentation. Extensive experiments and ablation studies on our newly built IHC cell membrane segmentation dataset validate the effectiveness of our framework.
AB - In the realm of clinical diagnostics and medical research, quantitative assessment of membrane activity in immunohistochemistry (IHC) images is standard practice. Despite a high demand for cell membrane segmentation, only a few algorithms have been developed, and there is a lack of open datasets in this field. In this paper, we propose a three-stage unsupervised framework to accurately segment positive cell membranes in IHC images. Our approach transforms the unsupervised segmentation task into a supervised one by generating pseudo-paired training data using Voronoi diagrams and CycleGAN. Additionally, we introduce a dual encoder segmentation model with domain adaptation modules to mitigate the domain shift between generated images and real images. To our best knowledge, this is the first work focusing on unsupervised learning for IHC cell membrane segmentation. Extensive experiments and ablation studies on our newly built IHC cell membrane segmentation dataset validate the effectiveness of our framework.
KW - Histopathology
KW - Immunohistochemistry
KW - Membrane Segmentation
KW - Unsupervised Semantic Segmentation
UR - http://www.scopus.com/inward/record.url?scp=85217280784&partnerID=8YFLogxK
U2 - 10.1109/BIBM62325.2024.10822664
DO - 10.1109/BIBM62325.2024.10822664
M3 - Conference Proceeding
AN - SCOPUS:85217280784
T3 - Proceedings - 2024 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2024
SP - 3555
EP - 3560
BT - Proceedings - 2024 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2024
A2 - Cannataro, Mario
A2 - Zheng, Huiru
A2 - Gao, Lin
A2 - Cheng, Jianlin
A2 - de Miranda, Joao Luis
A2 - Zumpano, Ester
A2 - Hu, Xiaohua
A2 - Cho, Young-Rae
A2 - Park, Taesung
PB - Institute of Electrical and Electronics Engineers Inc.
T2 - 2024 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2024
Y2 - 3 December 2024 through 6 December 2024
ER -