Pseudo Training Data Generation for Unsupervised Cell Membrane Segmentation in Immunohistochemistry Images

Xi Long, Tianyang Wang, Yanjia Kan, Yunze Wang, Silin Chen, Albert Zhou, Xianxu Hou, Jingxin Liu*

*Corresponding author for this work

Research output: Chapter in Book or Report/Conference proceedingConference Proceedingpeer-review

Abstract

In the realm of clinical diagnostics and medical research, quantitative assessment of membrane activity in immunohistochemistry (IHC) images is standard practice. Despite a high demand for cell membrane segmentation, only a few algorithms have been developed, and there is a lack of open datasets in this field. In this paper, we propose a three-stage unsupervised framework to accurately segment positive cell membranes in IHC images. Our approach transforms the unsupervised segmentation task into a supervised one by generating pseudo-paired training data using Voronoi diagrams and CycleGAN. Additionally, we introduce a dual encoder segmentation model with domain adaptation modules to mitigate the domain shift between generated images and real images. To our best knowledge, this is the first work focusing on unsupervised learning for IHC cell membrane segmentation. Extensive experiments and ablation studies on our newly built IHC cell membrane segmentation dataset validate the effectiveness of our framework.

Original languageEnglish
Title of host publicationProceedings - 2024 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2024
EditorsMario Cannataro, Huiru Zheng, Lin Gao, Jianlin Cheng, Joao Luis de Miranda, Ester Zumpano, Xiaohua Hu, Young-Rae Cho, Taesung Park
PublisherInstitute of Electrical and Electronics Engineers Inc.
Pages3555-3560
Number of pages6
ISBN (Electronic)9798350386226
DOIs
Publication statusPublished - 2024
Event2024 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2024 - Lisbon, Portugal
Duration: 3 Dec 20246 Dec 2024

Publication series

NameProceedings - 2024 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2024

Conference

Conference2024 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2024
Country/TerritoryPortugal
CityLisbon
Period3/12/246/12/24

Keywords

  • Histopathology
  • Immunohistochemistry
  • Membrane Segmentation
  • Unsupervised Semantic Segmentation

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