Pattern browsing and query adjustment for the exploratory analysis and cooperative visualisation of microarray time-course data

Paul Craig; Alan Cannon; Jessie Kennedy; Robert Kukla

doi:10.1007/978-3-642-16066-0_30

Pattern browsing and query adjustment for the exploratory analysis and cooperative visualisation of microarray time-course data

Paul Craig^*, Alan Cannon, Jessie Kennedy, Robert Kukla

^*Corresponding author for this work

Edinburgh Napier University

Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

5 Citations (Scopus)

Abstract

This paper presents work to support collaborative visualisation and data analysis in the microarray time-series explorer (MaTSE) software. We introduce a novel visualisation component called the 'pattern browser' which is used to support the annotation and adjustment of user queries. This includes an explanation of why this component is required and how it can be used with our online pattern repository by biologists collaborating in the analysis of a microarray time-course data set. To conclude we suggest which other types of collaborative visualisation would benefit from the introduction of a component with comparable functionality.

Original language	English
Title of host publication	Cooperative Design, Visualization, and Engineering - 7th International Conference, CDVE 2010, Proceedings
Pages	199-206
Number of pages	8
DOIs	https://doi.org/10.1007/978-3-642-16066-0_30
Publication status	Published - 2010
Externally published	Yes
Event	7th International Conference on Cooperative Design, Visualization, and Engineering, CDVE 2010 - Calvia, Mallorca, Spain Duration: 19 Sept 2010 → 22 Sept 2010

Publication series

Name	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume	6240 LNCS
ISSN (Print)	0302-9743
ISSN (Electronic)	1611-3349

Conference

Conference	7th International Conference on Cooperative Design, Visualization, and Engineering, CDVE 2010
Country/Territory	Spain
City	Calvia, Mallorca
Period	19/09/10 → 22/09/10

Keywords

Bioinformatics
Combined Multiple Views
Cooperative Visualisation
Microarray Data Analysis

Access to Document

10.1007/978-3-642-16066-0_30

Cite this

Craig, P., Cannon, A., Kennedy, J., & Kukla, R. (2010). Pattern browsing and query adjustment for the exploratory analysis and cooperative visualisation of microarray time-course data. In Cooperative Design, Visualization, and Engineering - 7th International Conference, CDVE 2010, Proceedings (pp. 199-206). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 6240 LNCS). https://doi.org/10.1007/978-3-642-16066-0_30

Craig, Paul ; Cannon, Alan ; Kennedy, Jessie et al. / Pattern browsing and query adjustment for the exploratory analysis and cooperative visualisation of microarray time-course data. Cooperative Design, Visualization, and Engineering - 7th International Conference, CDVE 2010, Proceedings. 2010. pp. 199-206 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).

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abstract = "This paper presents work to support collaborative visualisation and data analysis in the microarray time-series explorer (MaTSE) software. We introduce a novel visualisation component called the 'pattern browser' which is used to support the annotation and adjustment of user queries. This includes an explanation of why this component is required and how it can be used with our online pattern repository by biologists collaborating in the analysis of a microarray time-course data set. To conclude we suggest which other types of collaborative visualisation would benefit from the introduction of a component with comparable functionality.",

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series = "Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)",

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Craig, P, Cannon, A, Kennedy, J & Kukla, R 2010, Pattern browsing and query adjustment for the exploratory analysis and cooperative visualisation of microarray time-course data. in Cooperative Design, Visualization, and Engineering - 7th International Conference, CDVE 2010, Proceedings. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 6240 LNCS, pp. 199-206, 7th International Conference on Cooperative Design, Visualization, and Engineering, CDVE 2010, Calvia, Mallorca, Spain, 19/09/10. https://doi.org/10.1007/978-3-642-16066-0_30

Pattern browsing and query adjustment for the exploratory analysis and cooperative visualisation of microarray time-course data. / Craig, Paul; Cannon, Alan; Kennedy, Jessie et al.
Cooperative Design, Visualization, and Engineering - 7th International Conference, CDVE 2010, Proceedings. 2010. p. 199-206 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 6240 LNCS).

Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

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AB - This paper presents work to support collaborative visualisation and data analysis in the microarray time-series explorer (MaTSE) software. We introduce a novel visualisation component called the 'pattern browser' which is used to support the annotation and adjustment of user queries. This includes an explanation of why this component is required and how it can be used with our online pattern repository by biologists collaborating in the analysis of a microarray time-course data set. To conclude we suggest which other types of collaborative visualisation would benefit from the introduction of a component with comparable functionality.

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KW - Combined Multiple Views

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Craig P, Cannon A, Kennedy J, Kukla R. Pattern browsing and query adjustment for the exploratory analysis and cooperative visualisation of microarray time-course data. In Cooperative Design, Visualization, and Engineering - 7th International Conference, CDVE 2010, Proceedings. 2010. p. 199-206. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)). doi: 10.1007/978-3-642-16066-0_30

Pattern browsing and query adjustment for the exploratory analysis and cooperative visualisation of microarray time-course data

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Keywords

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