TY - JOUR
T1 - Investigation of guanidinium chloride-induced unfolding pathway of sphingosine kinase 1
AU - Gupta, Preeti
AU - Khan, Faez Iqbal
AU - Ambreen, Dilkash
AU - Lai, Dakn
AU - Alajmi, Mohamed F.
AU - Hussain, Afzal
AU - Islam, Asimul
AU - Ahmad, Faizan
AU - Hassan, Md Imtaiyaz
N1 - Publisher Copyright:
© 2020 Elsevier B.V.
PY - 2020/3/15
Y1 - 2020/3/15
N2 - Sphingosine kinase 1 (SphK1) is a lipid kinase which plays vital role in the regulation of varieties of biological processes including, cell growth, apoptosis and mitogenesis. In the present study, we investigated the guanidinium chloride (GdmCl)-induced denaturation of SphK1 at pH 8.0 and 25 °C using two different spectroscopic probes, i.e., mean residue ellipticity at 222 nm ([θ]222) and fluorescence emission maxima (λmax). A significant overlap between the transition curves obtained from both the spectral properties indicate that GdmCl-induced unfolding of SphK1 follows two-state process i.e., Native (N) ⇌ Denatured (D) state. Interestingly, a visible protein aggregation was observed at low concentrations of GdmCl ([GdmCl] ≤ 1.5 M). The analysis of transition curves was done to estimate the thermodynamic parameters associated with the stability of SphK1. To complement our experimental findings, 100 ns molecular dynamics (MD) simulations were performed. Spectroscopic studies together with MD simulations provided mechanistic insights of unfolding pathway of SphK1 along with its stability parameters.
AB - Sphingosine kinase 1 (SphK1) is a lipid kinase which plays vital role in the regulation of varieties of biological processes including, cell growth, apoptosis and mitogenesis. In the present study, we investigated the guanidinium chloride (GdmCl)-induced denaturation of SphK1 at pH 8.0 and 25 °C using two different spectroscopic probes, i.e., mean residue ellipticity at 222 nm ([θ]222) and fluorescence emission maxima (λmax). A significant overlap between the transition curves obtained from both the spectral properties indicate that GdmCl-induced unfolding of SphK1 follows two-state process i.e., Native (N) ⇌ Denatured (D) state. Interestingly, a visible protein aggregation was observed at low concentrations of GdmCl ([GdmCl] ≤ 1.5 M). The analysis of transition curves was done to estimate the thermodynamic parameters associated with the stability of SphK1. To complement our experimental findings, 100 ns molecular dynamics (MD) simulations were performed. Spectroscopic studies together with MD simulations provided mechanistic insights of unfolding pathway of SphK1 along with its stability parameters.
KW - Free energy landscape
KW - GdmCl-induced denaturation
KW - Molecular dynamic simulations
KW - Molecular spectroscopy
KW - Protein folding
KW - Protein stability
KW - Sphingosine kinase 1
UR - http://www.scopus.com/inward/record.url?scp=85077736675&partnerID=8YFLogxK
U2 - 10.1016/j.ijbiomac.2020.01.023
DO - 10.1016/j.ijbiomac.2020.01.023
M3 - Article
C2 - 31917989
AN - SCOPUS:85077736675
SN - 0141-8130
VL - 147
SP - 177
EP - 186
JO - International Journal of Biological Macromolecules
JF - International Journal of Biological Macromolecules
ER -