TY - JOUR
T1 - DigestPath
T2 - A benchmark dataset with challenge review for the pathological detection and segmentation of digestive-system
AU - Da, Qian
AU - Huang, Xiaodi
AU - Li, Zhongyu
AU - Zuo, Yanfei
AU - Zhang, Chenbin
AU - Liu, Jingxin
AU - Chen, Wen
AU - Li, Jiahui
AU - Xu, Dou
AU - Hu, Zhiqiang
AU - Yi, Hongmei
AU - Guo, Yan
AU - Wang, Zhe
AU - Chen, Ling
AU - Zhang, Li
AU - He, Xianying
AU - Zhang, Xiaofan
AU - Mei, Ke
AU - Zhu, Chuang
AU - Lu, Weizeng
AU - Shen, Linlin
AU - Shi, Jun
AU - Li, Jun
AU - S, Sreehari
AU - Krishnamurthi, Ganapathy
AU - Yang, Jiangcheng
AU - Lin, Tiancheng
AU - Song, Qingyu
AU - Liu, Xuechen
AU - Graham, Simon
AU - Bashir, Raja Muhammad Saad
AU - Yang, Canqian
AU - Qin, Shaofei
AU - Tian, Xinmei
AU - Yin, Baocai
AU - Zhao, Jie
AU - Metaxas, Dimitris N.
AU - Li, Hongsheng
AU - Wang, Chaofu
AU - Zhang, Shaoting
N1 - Funding Information:
This study was supported by the funding of the Science and Technology Commission Shanghai Municipality ( 19511121400 ), the National Key Research and Development Project of China ( 2020YFC2004800 ), the Science and Technology Project for Innovation Ecosystem Construction of Zhengzhou National Supercomputing Center (201400210400), and the Central Guidance on Local Science and Technology Development Fund of Henan Province. The authors would like to thank the Intel® student Ambassador Program for AI, which provided the necessary computational resources on the Intel® AI DevCloud for running the WSI inference pipeline. The authors are also grateful to the NVIDIA GPU Grant Program for donating Titan-V GPU used in this research. The authors would like to thank Qi Duan, and Shuang Yang from SenseTime Research for their great help in challenging organizations. The authors are thankful to Xiao Mu, Bo Xu, Bin Gu, Zhaoyu Wang, Qiang Li from Shanghai Histo Pathology Diagnostic Center, Weiwei Sun, Minmin Gu, Caijuan Li, Yanqiong Zhang from Shanghai Songjiang District Central Hospital for their work in preparation of the data set.
Funding Information:
This study was supported by the funding of the Science and Technology Commission Shanghai Municipality (19511121400), the National Key Research and Development Project of China (2020YFC2004800), the Science and Technology Project for Innovation Ecosystem Construction of Zhengzhou National Supercomputing Center (201400210400), and the Central Guidance on Local Science and Technology Development Fund of Henan Province. The authors would like to thank the Intel® student Ambassador Program for AI, which provided the necessary computational resources on the Intel® AI DevCloud for running the WSI inference pipeline. The authors are also grateful to the NVIDIA GPU Grant Program for donating Titan-V GPU used in this research. The authors would like to thank Qi Duan, and Shuang Yang from SenseTime Research for their great help in challenging organizations. The authors are thankful to Xiao Mu, Bo Xu, Bin Gu, Zhaoyu Wang, Qiang Li from Shanghai Histo Pathology Diagnostic Center, Weiwei Sun, Minmin Gu, Caijuan Li, Yanqiong Zhang from Shanghai Songjiang District Central Hospital for their work in preparation of the data set.
Publisher Copyright:
© 2022 Elsevier B.V.
PY - 2022/8
Y1 - 2022/8
N2 - Examination of pathological images is the golden standard for diagnosing and screening many kinds of cancers. Multiple datasets, benchmarks, and challenges have been released in recent years, resulting in significant improvements in computer-aided diagnosis (CAD) of related diseases. However, few existing works focus on the digestive system. We released two well-annotated benchmark datasets and organized challenges for the digestive-system pathological cell detection and tissue segmentation, in conjunction with the International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI). This paper first introduces the two released datasets, i.e., signet ring cell detection and colonoscopy tissue segmentation, with the descriptions of data collection, annotation, and potential uses. We also report the set-up, evaluation metrics, and top-performing methods and results of two challenge tasks for cell detection and tissue segmentation. In particular, the challenge received 234 effective submissions from 32 participating teams, where top-performing teams developed advancing approaches and tools for the CAD of digestive pathology. To the best of our knowledge, these are the first released publicly available datasets with corresponding challenges for the digestive-system pathological detection and segmentation. The related datasets and results provide new opportunities for the research and application of digestive pathology.
AB - Examination of pathological images is the golden standard for diagnosing and screening many kinds of cancers. Multiple datasets, benchmarks, and challenges have been released in recent years, resulting in significant improvements in computer-aided diagnosis (CAD) of related diseases. However, few existing works focus on the digestive system. We released two well-annotated benchmark datasets and organized challenges for the digestive-system pathological cell detection and tissue segmentation, in conjunction with the International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI). This paper first introduces the two released datasets, i.e., signet ring cell detection and colonoscopy tissue segmentation, with the descriptions of data collection, annotation, and potential uses. We also report the set-up, evaluation metrics, and top-performing methods and results of two challenge tasks for cell detection and tissue segmentation. In particular, the challenge received 234 effective submissions from 32 participating teams, where top-performing teams developed advancing approaches and tools for the CAD of digestive pathology. To the best of our knowledge, these are the first released publicly available datasets with corresponding challenges for the digestive-system pathological detection and segmentation. The related datasets and results provide new opportunities for the research and application of digestive pathology.
KW - Benchmark dataset
KW - Cell detection
KW - Digestive system cancer
KW - Grand challenge
KW - Tissue segmentation
UR - http://www.scopus.com/inward/record.url?scp=85134035713&partnerID=8YFLogxK
U2 - 10.1016/j.media.2022.102485
DO - 10.1016/j.media.2022.102485
M3 - Article
C2 - 35679692
AN - SCOPUS:85134035713
SN - 1361-8415
VL - 80
JO - Medical Image Analysis
JF - Medical Image Analysis
M1 - 102485
ER -