Customizing SAM for histologic image segmentation of kidney biopsy by a detector approach: det-SAM

Xujia Ning*, Yi Ni, Kaicheng Liang, Duan Wang, Erick Purwanto, Ka Lok Man

*Corresponding author for this work

Research output: Chapter in Book or Report/Conference proceedingConference Proceedingpeer-review

Abstract

In recent years, large models have manifested unparalleled strengths in various fields and became a major trend in AI advancement. In the field of computer vision, the Segment Anything Model (SAM) has surpassed the majority of conventional models with its high generalization ability and profound understanding of the notion of 'object'. However, despite its outstanding capacity in common semantic segmentation tasks, its performance in medical image segmentation is previously proven unsatisfactory by many. For the purpose of unraveling SAM's untapped potentials in medical image segmentation, we introduce an innovative detector approach and a corresponding model: det-SAM. This model is characterized by its detection head in the architecture, which provides additional domain information to SAM through prompt engineering in medical segmentation tasks. This design allows det-SAM to utilize SAM's advantages in graphical discernibility and achieve the foremost accuracy in three segmentation tasks on histological images of kidney biopsy. In addition, our model is proficient in handling multifarious sizes and compositions of medical images, and the computational requirement of the model's training process is significantly lower than other customization approaches of SAM.

Original languageEnglish
Title of host publicationProceedings - 2023 International Conference on Cyber-Enabled Distributed Computing and Knowledge Discovery, CyberC 2023
PublisherInstitute of Electrical and Electronics Engineers Inc.
Pages225-233
Number of pages9
ISBN (Electronic)9798350308693
DOIs
Publication statusPublished - 2023
Event15th International Conference on Cyber-Enabled Distributed Computing and Knowledge Discovery, CyberC 2023 - Jiangsu, China
Duration: 2 Nov 20234 Nov 2023

Publication series

NameProceedings - 2023 International Conference on Cyber-Enabled Distributed Computing and Knowledge Discovery, CyberC 2023

Conference

Conference15th International Conference on Cyber-Enabled Distributed Computing and Knowledge Discovery, CyberC 2023
Country/TerritoryChina
CityJiangsu
Period2/11/234/11/23

Keywords

  • computational pathohistology
  • kidney biopsy
  • medical image segmentation
  • prompt engineering
  • SAM

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