An experimental research for automatic classification of unbalanced single-channel protein sub-cellular location fluorescence image set

Dechang Xu, Jianzhong Li

Research output: Chapter in Book or Report/Conference proceedingConference Proceedingpeer-review

1 Citation (Scopus)
Plum Print visual indicator of research metrics
  • Citations
    • Citation Indexes: 1
  • Captures
    • Readers: 3
see details

Abstract

To Model the protein sub-cellular localization pattern which responds to drugs' treatment is an important problem for medical applications named as high content screening (HCS) with bio-imaging and machine learning. Traditionally, at least, three channels' images have to be retrieved for auto-focusing and segmentation on DNA channel, background correction on auto-fluorescence channel and protein sub-cellular localization analysis on GFP channel which is a time consuming and error accumulating procedure. An automatic classification of Single-channel Protein Sub-cellular Location Fluorescence Images without segmentation is desired for speeding up the pattern analysis. But in the real world, the data imbalance often occurred and affected the classification accuracy. By now there are a variety of approaches proposed for improved the classification accuracy including the re-sampling and reweighting. This experiment engaged in comparing existed solutions for further research.

Original languageEnglish
Title of host publicationProceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013
Pages68-70
Number of pages3
DOIs
Publication statusPublished - 2013
Externally publishedYes
Event2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013 - Shanghai, China
Duration: 18 Dec 201321 Dec 2013

Publication series

NameProceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013

Conference

Conference2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013
Country/TerritoryChina
CityShanghai
Period18/12/1321/12/13

Keywords

  • Protein sub-cellular localization
  • Random forest
  • Unbalance data classification

Fingerprint

Dive into the research topics of 'An experimental research for automatic classification of unbalanced single-channel protein sub-cellular location fluorescence image set'. Together they form a unique fingerprint.

Cite this

Xu, D., & Li, J. (2013). An experimental research for automatic classification of unbalanced single-channel protein sub-cellular location fluorescence image set. In Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013 (pp. 68-70). Article 6732766 (Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013). https://doi.org/10.1109/BIBM.2013.6732766