TY - GEN
T1 - An experimental research for automatic classification of unbalanced single-channel protein sub-cellular location fluorescence image set
AU - Xu, Dechang
AU - Li, Jianzhong
PY - 2013
Y1 - 2013
N2 - To Model the protein sub-cellular localization pattern which responds to drugs' treatment is an important problem for medical applications named as high content screening (HCS) with bio-imaging and machine learning. Traditionally, at least, three channels' images have to be retrieved for auto-focusing and segmentation on DNA channel, background correction on auto-fluorescence channel and protein sub-cellular localization analysis on GFP channel which is a time consuming and error accumulating procedure. An automatic classification of Single-channel Protein Sub-cellular Location Fluorescence Images without segmentation is desired for speeding up the pattern analysis. But in the real world, the data imbalance often occurred and affected the classification accuracy. By now there are a variety of approaches proposed for improved the classification accuracy including the re-sampling and reweighting. This experiment engaged in comparing existed solutions for further research.
AB - To Model the protein sub-cellular localization pattern which responds to drugs' treatment is an important problem for medical applications named as high content screening (HCS) with bio-imaging and machine learning. Traditionally, at least, three channels' images have to be retrieved for auto-focusing and segmentation on DNA channel, background correction on auto-fluorescence channel and protein sub-cellular localization analysis on GFP channel which is a time consuming and error accumulating procedure. An automatic classification of Single-channel Protein Sub-cellular Location Fluorescence Images without segmentation is desired for speeding up the pattern analysis. But in the real world, the data imbalance often occurred and affected the classification accuracy. By now there are a variety of approaches proposed for improved the classification accuracy including the re-sampling and reweighting. This experiment engaged in comparing existed solutions for further research.
KW - Protein sub-cellular localization
KW - Random forest
KW - Unbalance data classification
UR - http://www.scopus.com/inward/record.url?scp=84894544676&partnerID=8YFLogxK
U2 - 10.1109/BIBM.2013.6732766
DO - 10.1109/BIBM.2013.6732766
M3 - Conference Proceeding
AN - SCOPUS:84894544676
SN - 9781479913091
T3 - Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013
SP - 68
EP - 70
BT - Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013
T2 - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013
Y2 - 18 December 2013 through 21 December 2013
ER -