Jia Meng

Research output

Research output per year 2008 2012 2019 2020 2021 2022 2023 2025

• 85 Article
• 35 Conference Proceeding
• 6 Review article
• 5 Chapter
• 6 More
  • 4 Patent
  • 2 Editorial

Research output per year

Research output per year

Search results

• 2023

  A Robust Framework of Chromosome Straightening With Vit-Patch Gan

  Song, S., Wang, J., Cheng, F., Cao, Q., Zuo, Y., Lei, Y., Yang, R., Yang, C., Coenen, F., Meng, J., Dang, K. & Su, J., 18 Apr 2023, 2023 IEEE International Symposium on Biomedical Imaging, ISBI 2023. IEEE Computer Society, (Proceedings - International Symposium on Biomedical Imaging; vol. 2023-April).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

  Open Access

  • Motion 100%
  • Cytogenetics 100%
  • Genetics 50%
  • Karyotype 50%
  • Perceptual Image 33%
  1 Citation (Scopus)
• 2022

  Stepwise Feature Fusion: Local Guides Global

  Wang, J., Huang, Q., Tang, F., Meng, J., Su, J. & Song, S., 2022, Medical Image Computing and Computer Assisted Intervention – MICCAI 2022 - 25th International Conference, Proceedings. Wang, L., Dou, Q., Fletcher, P. T., Speidel, S. & Li, S. (eds.). Springer Science and Business Media Deutschland GmbH, p. 110-120 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13433 LNCS).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

  • Polyp 100%
  • Learning 60%
  • Colonoscopy 40%
  • Restrict Attention 33%
  • Polyp Segmentation 33%
  139 Citations (Scopus)
• 2021

  A Meta-analysis: Evaluating the Effect of METTL3/METTL14 on m6A Level Based on Knockdown Samples

  Zhang, Y., Wu, Y., Zhen, D., Chen, K. & Meng, J., 20 Jul 2021, Proceedings of the 5th International Conference on Biological Information and Biomedical Engineering, BIBE 2021. Chen, B. (ed.). Association for Computing Machinery, 3469715. (ACM International Conference Proceeding Series).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

  • Methylation 100%
  • Sample 100%
  • Meta-Analysis 100%
  • Messenger RNA 66%
  • Methyltransferase 33%

• A Novel Application of Image-to-Image Translation: Chromosome Straightening Framework by Learning from a Single Image

  Song, S., Huang, D., Hu, Y., Yang, C., Meng, J., Ma, F., Coenen, F., Zhang, J. & Su, J., 2021, Proceedings - 2021 14th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics, CISP-BMEI 2021. Li, Q., Wang, L., Wang, Y. & Li, W. (eds.). Institute of Electrical and Electronics Engineers Inc., (Proceedings - 2021 14th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics, CISP-BMEI 2021).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

  Open Access
  7 Citations (Scopus)

• Computational Prediction of N⁶-methyladenosine (m⁶A) RNA Methylation in SARS-CoV-2 Viral Transcripts

  Xu, Q., Wu, X. & Meng, J., 20 Jul 2021, Proceedings of the 5th International Conference on Biological Information and Biomedical Engineering, BIBE 2021. Chen, B. (ed.). Association for Computing Machinery, 3469689. (ACM International Conference Proceeding Series).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

  • N6-Methyladenosine 100%
  • RNA Methylation 100%
  • SARS Coronavirus 100%
  • RNA 100%
  • 6 N Methyladenosine 100%

• Prediction of m⁶A Reader Substrate Sites Using Deep Convolutional and Recurrent Neural Network

  Wu, Y., Zhang, Y., Wang, R., Meng, J., Chen, K., Song, Y. & Huang, D., 20 Jul 2021, Proceedings of the 5th International Conference on Biological Information and Biomedical Engineering, BIBE 2021. Chen, B. (ed.). Association for Computing Machinery, 3469706. (ACM International Conference Proceeding Series).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

  • Learning System 100%
  • Deep Learning 100%
  • Methylation 100%
  • Recurrent Neural Network 100%
  • Reading 100%
• 2020

  An Improved Algorithm for Estimating the Distribution of RNA-related Genomic Features

  Wu, J., Zhang, L., Weng, Y., Meng, J., Su, J. & Wang, Y., 21 Jul 2020, Proceedings of the 4th International Conference on Biological Information and Biomedical Engineering, BIBE 2020. Yu, W. & Liu, C. (eds.). Association for Computing Machinery, (ACM International Conference Proceeding Series).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

• Gibbs Sampling Based Banoian Biclustering of Gene Expression Data

  Chen, D., Liu, Q., Meng, J. & Su, J., 17 Oct 2020, Proceedings - 2020 13th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics, CISP-BMEI 2020. Zheng, Q., Zheng, X., Zhao, X., Yan, W., Zhang, N. & Wang, L. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 790-795 6 p. 9263631. (Proceedings - 2020 13th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics, CISP-BMEI 2020).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

  • Models 100%
  • Simulated Data 33%
  • Microarray Data 33%
• 2019

  AMPrimer: An R package for anchored multiplex PCR primer design

  Wang, Y., Liu, X., Wu, X., Yuan, X., Meng, J. & Tang, Y., 2019, 3rd International Conference on Biological Information and Biomedical Engineering, BIBE 2019. VDE Verlag GmbH, p. 293-296 4 p. (3rd International Conference on Biological Information and Biomedical Engineering, BIBE 2019).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

• Detection of m₆A RNA Methylation in Nanopore Sequencing Data Using Support Vector Machine

  Jia, S., Luo, H., Gao, Q., Guo, J., Su, J., Meng, J. & Wu, X., Oct 2019, Proceedings - 2019 12th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics, CISP-BMEI 2019. Li, Q. & Wang, L. (eds.). Institute of Electrical and Electronics Engineers Inc., 8965760. (Proceedings - 2019 12th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics, CISP-BMEI 2019).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review
  2 Citations (Scopus)

• Estimate the proportion of non-specific binding in MeRIP-Seq data

  Bao, J., Wei, Z., Meng, J. & Su, J., 2019, 3rd International Conference on Biological Information and Biomedical Engineering, BIBE 2019. VDE Verlag GmbH, p. 392-396 5 p. (3rd International Conference on Biological Information and Biomedical Engineering, BIBE 2019).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

• Predict disease-related RNA methylation sites from the methylationexpression association by using hypergeometric test

  Tang, Y., Chen, K., Wei, Z., Wu, X. & Meng, J., 2019, 3rd International Conference on Biological Information and Biomedical Engineering, BIBE 2019. VDE Verlag GmbH, p. 418-424 7 p. (3rd International Conference on Biological Information and Biomedical Engineering, BIBE 2019).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

  • Association 100%
  • RNA Methylation 100%
  • Methylation 100%
  • RNA 100%
  • Nested Gene 25%
• 2018

  Differential analysis of RNA methylation with a novel statistical test

  Tang, Y., Wei, Z. & Meng, J., 2018, International Conference on Biological Information and Biomedical Engineering, BIBE 2018. Liu, C. (ed.). VDE Verlag GmbH, p. 366-373 8 p. (International Conference on Biological Information and Biomedical Engineering, BIBE 2018).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

• Interactive genomic visualization for R/bioconductor

  Ma, J. & Meng, J., 2018, International Conference on Biological Information and Biomedical Engineering, BIBE 2018. Liu, C. (ed.). VDE Verlag GmbH, p. 380-383 4 p. (International Conference on Biological Information and Biomedical Engineering, BIBE 2018).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

  2 Citations (Scopus)
• 2016

  Novel numerical and computational techniques for remote sensor based monitoring of freshwater quality

  Zhu, X., Yue, Y., Wong, P., Zhang, Y. & Meng, J., 17 Sept 2016, Proceedings of 2016 IEEE International Conference of Online Analysis and Computing Science, ICOACS 2016. Chen, G. & Peng, J. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 91-95 5 p. 7563055. (Proceedings of 2016 IEEE International Conference of Online Analysis and Computing Science, ICOACS 2016).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review
• 2015

  Modeling of replicates variances for detecting RNA methylation site in MERIP-SEQ data

  Cui, X., Meng, J., Zhang, S. & Huang, Y., 31 Aug 2015, 2015 IEEE China Summit and International Conference on Signal and Information Processing, ChinaSIP 2015 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 802-806 5 p. 7230515. (2015 IEEE China Summit and International Conference on Signal and Information Processing, ChinaSIP 2015 - Proceedings).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

• Sketching the distribution of transcriptomic features on RNA transcripts with Travis coordinates

  Cui, X., Wei, Z., Zhang, L., Liu, H., Sun, L., Zhang, S. W., Huang, Y. & Meng, J., 16 Dec 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Schapranow, L. M., Zhou, J., Hu, X. T., Ma, B., Rajasekaran, S., Miyano, S., Yoo, I., Pierce, B., Shehu, A., Gombar, V. K., Chen, B., Pai, V. & Huan, J. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1536-1542 7 p. 7359904. (Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review
• 2014

  Detecting differentially methylated mRNA from MeRIP-Seq with likelihood ratio test

  Zhang, L., Meng, J., Liu, H., Cui, X., Zhang, S. W., Chen, Y. & Huang, Y., 5 Feb 2014, 2014 IEEE Global Conference on Signal and Information Processing, GlobalSIP 2014. Institute of Electrical and Electronics Engineers Inc., p. 1368-1371 4 p. 7032349. (2014 IEEE Global Conference on Signal and Information Processing, GlobalSIP 2014).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review
  2 Citations (Scopus)

• Differential analysis of RNA methylome with improved spatial resolution

  Zhang, Y. C., Zhang, S. W., Liu, L., Zhang, L., Liu, H., Cui, X., Huang, Y. & Meng, J., 5 Feb 2014, 2014 IEEE Global Conference on Signal and Information Processing, GlobalSIP 2014. Institute of Electrical and Electronics Engineers Inc., p. 1372-1375 4 p. 7032350. (2014 IEEE Global Conference on Signal and Information Processing, GlobalSIP 2014).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review
• 2013

  A bag-of-words model for task-load prediction from EEG in complex environments

  Merino, L. M., Meng, J., Gordon, S., Lance, B. J., Johnson, T., Paul, V., Robbins, K., Vettel, J. M. & Huang, Y., 18 Oct 2013, 2013 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2013 - Proceedings. p. 1227-1231 5 p. 6637846. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

  • Models 100%
  • Complex Environment 100%
  • Electroencephalography 100%
  • Classifier 66%
  • Complexities 50%
  8 Citations (Scopus)

• A Deep Learning method for classification of images RSVP events with EEG data

  Ahmed, S., Mauricio Merino, L., Mao, Z., Meng, J., Robbins, K. & Huang, Y., 2013, 2013 IEEE Global Conference on Signal and Information Processing, GlobalSIP 2013 - Proceedings. p. 33-36 4 p. 6736804. (2013 IEEE Global Conference on Signal and Information Processing, GlobalSIP 2013 - Proceedings).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review
  32 Citations (Scopus)

• Differential analysis of rna methylation sequencing data

  Cui, X., Meng, J., Rao, M. K., Chen, Y. & Huang, Y., 2013, 2013 IEEE Global Conference on Signal and Information Processing, GlobalSIP 2013 - Proceedings. p. 41-42 2 p. 6736806. (2013 IEEE Global Conference on Signal and Information Processing, GlobalSIP 2013 - Proceedings).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review
  1 Citation (Scopus)

• Integration of gene expression, genome wide DNA methylation, and gene networks for clinical outcome prediction in ovarian cancer

  Zhang, L., Liu, H., Meng, J., Wang, X., Chen, Y. & Huangi, Y., 2013, Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013. p. 535-538 4 p. 6732553. (Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

  • Gene 100%
  • Prognosis 100%
  • Gene Expression 100%
  • Ovarian Cancer 100%
  • DNA Methylation 100%

• Unveiling the dynamics in RNA epigenetic regulations

  Meng, J., Cui, X., Liu, H., Zhang, L., Zhang, S., Rao, M. K., Chen, Y. & Huang, Y., 2013, Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013. p. 139-144 6 p. 6732477. (Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review
  10 Citations (Scopus)
• 2012

  Basis-expansion factor models for uncovering transcription factor regulatory network

  Sanchez-Castillo, M., Meng, J., Tienda-Luna, I. M. & Huang, Y., 2012, 2012 IEEE Statistical Signal Processing Workshop, SSP 2012. p. 700-703 4 p. 6319799. (2012 IEEE Statistical Signal Processing Workshop, SSP 2012).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

• Classification of EEG recordings without perfectly time-locked events

  Meng, J., Mauricio Meriño, L., Robbins, K. & Huang, Y., 2012, 2012 IEEE Statistical Signal Processing Workshop, SSP 2012. p. 444-447 4 p. 6319727. (2012 IEEE Statistical Signal Processing Workshop, SSP 2012).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review
  1 Citation (Scopus)

• Exploiting correlated discriminant features in time frequency and space for characterization and robust classification of image RSVP events with EEG data

  Meng, J., Meriño, L. M., Robbins, K. & Huang, Y., 2012, 2012 IEEE Statistical Signal Processing Workshop, SSP 2012. p. 668-671 4 p. 6319790. (2012 IEEE Statistical Signal Processing Workshop, SSP 2012).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review
• 2011

  Bayesian non-negative factor analysis for reconstructing transcriptional regulatory network

  Meng, J., Zhang, J., Chen, Y. & Huang, Y., 2011, 2011 IEEE Statistical Signal Processing Workshop, SSP 2011. p. 361-364 4 p. 5967704. (IEEE Workshop on Statistical Signal Processing Proceedings).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review
  1 Citation (Scopus)

• Clustering DNA methylation expressions using nonparametric beta mixture model

  Zhang, L., Meng, J., Liu, H. & Huang, Y., 2011, Proceedings 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS'11. IEEE Computer Society, p. 170-173 4 p. 6169472. (Proceedings - IEEE International Workshop on Genomic Signal Processing and Statistics).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review
  3 Citations (Scopus)

• Uncover cooperative gene regulations by microRNAs and transcription factors in glioblastoma using a nonnegative hybrid factor model

  Meng, J., Chen, H. I., Zhang, J., Chen, Y. & Huang, Y., 2011, 2011 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2011 - Proceedings. p. 6012-6015 4 p. 5947732. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review
  6 Citations (Scopus)

• Uncover transcription factor mediated gene regulations using Bayesian nonnegative factor models

  Meng, J., Chen, H. I., Zhang, J., Chen, Y. & Huang, Y., 2011, 2011 IEEE International Conference on Signal Processing, Communications and Computing, ICSPCC 2011. 6061806. (2011 IEEE International Conference on Signal Processing, Communications and Computing, ICSPCC 2011).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review
• 2010

  An iterated conditional mode solution for Bayesian factor modeling of transcriptional regulatory networks

  Meng, J., Zhang, J., Chen, Y. & Huang, Y., 2010, 2010 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2010. 5719679. (2010 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2010).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review
  1 Citation (Scopus)

• An iterated conditional modes solution for sparse Bayesian factor modeling of transcriptional regulatory networks

  Meng, J., Zhang, J., Chen, Y. & Huang, Y., 2010, Proceedings - 2010 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2010. p. 335-340 6 p. 5706587. (Proceedings - 2010 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2010).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

• Uncovering transcriptional regulatory networks by sparse Bayesian factor model

  Meng, J., Zhang, J., Chen, Y. & Huang, Y., 2010, ICSP2010 - 2010 IEEE 10th International Conference on Signal Processing, Proceedings. p. 1785-1788 4 p. 5656704. (International Conference on Signal Processing Proceedings, ICSP).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

  Open Access
• 2008

  An iterative time windowed signature algorith for time-dependent transcription module discovery

  Meng, J., Gao, S. J. & Huang, Y., 2008, GENSIPS'08 - 6th IEEE International Workshop on Genomic Signal Processing and Statistics. 4555659. (GENSIPS'08 - 6th IEEE International Workshop on Genomic Signal Processing and Statistics).

  Research output: Chapter in Book or Report/Conference proceeding › Conference Proceeding › peer-review

  Open Access